PBMC collection, DNA isolation and hydrolysis Care was taken to avoid artefactual oxidation of DNA during its extraction and hydrolysis. PBMCs were isolated from 12 ml out of the 20 ml blood samples using Unisep Maxi tubes (Novamed). These were stored in liquid nitrogen until being used for DNA isolation. Latter was performed using the “”protocol G”" described by Ravanat et al. [18] with modifications aimed at optimisation of the analytical procedure with minimum delays [10]. Other modifications Palbociclib in vivo included addition of desferrioxamine to extraction and digestion buffers. 8-oxodG

HPLC-ED analysis An optimised method for the quantification of 8-oxodG in PBMCs has been described previously

[10]. Briefly, the DNA hydrolysate was analysed by HPLC with an electrochemical detector (Coulochem II; ESA Inc., Chelmsford, MA) using a Supelcosil reversed-phase C18 HPLC column (150 × 3 mm, 5 μm -Supelco) equipped with a C18 guard column. The eluant was 10 mM potassium dihydrogen phosphate, pH 4.6, containing 7.5% methanol, RG-7388 in vivo at a flow rate of 0.6 ml/min. The potentials applied to the analytical cell (ESA 5011) were + 50 mV and + 350 mV for E1 and E2, respectively. 2′dG was measured in the same run of corresponding 8-oxodG with a UV detector (Pharmacia LKB VWM 2141) at 290 nm situated after the ED cell. Acquisition and quantitative analyses of chromatograms were carried out using Eurochrom 2000 software (Knauer). The

amount of 8-oxodG in DNA was calculated as the number of 8-oxodG BYL719 in vivo molecules/106 unmodified 2′dG. HPLC determination of serum vitamin A and E Concentrations of vitamins A and E were measured in the sera obtained from the blood samples of all subjects, except for 3 (1 control, 2 patients). DNA ligase The serum fraction was obtained after the isolation of PBMCs from blood by centrifugation at 1000 × g for 20 min. Samples from control and cancer subjects were stored in the same conditions, at -80°C for several years until analysis. Simultaneous determination of vitamin A and E was performed by HPLC as previously described [19], with the following modifications. The HPLC system consisted of a Summit Dual Gradient System including a diode array detector from Dionex (Voisin le Bretonneux, France). The stationary phase consisted of a LiChroCART® 125-4 LiChrospher® 100 RP-18, 5 μm protected by a guard column filled with the same stationary phase both from Merck Chemicals, France. The mobile phase consisted of methanol and the flow rate was 0.8 ml/min. Separations were carried out at 25°C. Vitamin A and E peaks were integrated at 294 nm and the specificity of the detection was based on retention factors and comparison of UV-Visible spectra with those collected from the standard samples.